PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00044g00198.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family ZF-HD
Protein Properties Length: 187aa    MW: 21568.5 Da    PI: 8.6716
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00044g00198.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.12.4e-291970460
               ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                              ++YkeClkNhA+ +GghavDGCgEfmp+ ge    +alkC AC+CHRnFHR+e++++
  Peaxi162Scf00044g00198.1 19 YKYKECLKNHAVGIGGHAVDGCGEFMPA-GE----DALKCVACNCHRNFHRKETQTH 70
                              68*************************9.44....6*****************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.4E-262067IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-192069IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.6E-272066IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.9252166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.9E-29111185IPR009057Homeodomain-like
SuperFamilySSF466891.79E-17115184IPR009057Homeodomain-like
TIGRFAMsTIGR015657.2E-25124181IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEFGNQEMHD DQKELEMPYK YKECLKNHAV GIGGHAVDGC GEFMPAGEDA LKCVACNCHR  60
NFHRKETQTH HPPCYRNPPF GTYFHHVMPE QRPLALPSTS GGGGGGYIED QEDMQRNPNN  120
SGTKKRFRTK FSQKQKEKML ELAEKLGWRI QRQDEGIVQQ LCNEIGVKRH VFKVWMHNNK  180
YILGKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-221231801673ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802158.11e-100PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
RefseqXP_016462880.11e-100PREDICTED: zinc-finger homeodomain protein 2-like isoform X2
SwissprotA2Z2597e-60ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH57e-60ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLM1D8C79e-80M1D8C7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000849193e-79(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.19e-61homeobox protein 22